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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21658046_21662451_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21658046 - 21662451
Intron Length:
4406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCATATATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ACTGTTTTAACT
Flanking Amino Acid:
ISAVAQVQVRGVSHPPQIVL
Intron Amino Acid Position:
779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.3
0.59
0.9
69.5
40
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
67.6
0.63
1.4
77.06
40.2

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043