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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21662558_21664261_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21662558 - 21664261
Intron Length:
1704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTTTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
CTGCCTTTGAAA
Flanking Amino Acid:
LGPLVEHIYELHNIGPSAIN
Intron Amino Acid Position:
815

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
79.3
0.66
0.9
76.7
36.8
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
53.7
0.11
1.5
60.44
39.7

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043