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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21664421_21670408_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21664421 - 21670408
Intron Length:
5988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TATATCATAACC
Flanking Amino Acid:
SSPINTMQIKFAIPQDTPEL
Intron Amino Acid Position:
868

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
79.4
0.73
1
80.1
32
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
62.5
0.37
1.6
73.37
36.7

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043