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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21670535_21673906_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21670535 - 21673906
Intron Length:
3372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATGTATAACT
Flanking Amino Acid:
PYRRNSAKILNCTNVKCILI
Intron Amino Acid Position:
910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
78.1
26.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.8
0.56
1
69.4
40.3
Minor 5ss
34.2
-1.8
2.8
36.8
41.9
Minor BPS
53.8
0.2
2
76.18
40.3

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043