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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21674021_21685669_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21674021 - 21685669
Intron Length:
11649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
CATATAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTAATAATT
Flanking Amino Acid:
SRLWVQTFLQRKNDPYTLSS
Intron Amino Acid Position:
948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.1
0.5
1
67.3
42.3
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
62.1
0.46
1.8
85.83
33.8

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043