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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2175097_2177071_R

Intron Information:

Intron Rank:
148999
Intron Class:
major
Intron Phase:
Intron Coordinates:
2175097 - 2177071
Intron Length:
1975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAGAT
U12 Branch Point Sequence:
ACCTCCACAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.4
32.7
Major BPS
58.6
0.22
1.1
55.1
40.4
Major PPT
89
0.88
0.6
89
20.3
Minor 5ss
39.9
-1.1
3.3
57.8
46.8
Minor BPS
46.7
-0.2
1.9
56.45
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027621
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044030
2174770 - 2178623
3854