Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21767490_21768514_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

21767490 - 21768514

Intron Length:

1025

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGGGC

5'SS Class:

strong_major

3'SS Sequence:

TCTGTATCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTACAC

U12 Branch Point Sequence:

TACTCTGTATCC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

67.9

37.4

Major BPS

60.5

0.26

1.1

70.3

34.5

Major PPT

75.4

0.57

0.9

36.1

Minor 5ss

24.1

-3

3.3

42.8

Minor BPS

48.1

-0.1

2.2

62.78

43.1

Associated Gene:

Gene:

FAM171A1

Ensembl Gene ID:

ENSAPLG00000013617

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045104

21767382 - 21840845

73464