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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21805964_21816675_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21805964 - 21816675
Intron Length:
10712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACGCTTTTAATT
Flanking Amino Acid:
SAPWKPVRLPGARTQPQVHF
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.3
32.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.4
0.75
0.8
82
34.8
Minor 5ss
30.9
-2.2
3.4
38.5
41.1
Minor BPS
59.8
0.39
1.2
66.58
39.1

Associated Gene:

Gene:
FAM171A1
Ensembl Gene ID:
ENSAPLG00000013617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020178
21756736 - 21840845
84110