About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21811685_21816675_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21811685 - 21816675
Intron Length:
4991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACGCTTTTAATT
Flanking Amino Acid:
DVVQIVSGFQGARTQPQVHF
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.4
0.75
0.8
82
34.8
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
59.8
0.39
1.2
66.58
39.1

Associated Gene:

Gene:
FAM171A1
Ensembl Gene ID:
ENSAPLG00000013617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045104
21767382 - 21840845
73464
ENSAPLT00000026332
21768024 - 21840845
72822
ENSAPLT00000014202
21756700 - 21840845
84146