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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21835920_21838396_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21835920 - 21838396
Intron Length:
2477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TCTGGCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
CAGGTCTAAATT
Flanking Amino Acid:
WVAAMSPTIPGPVVTHDITS
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
76
0.59
0.9
65.7
41
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
48.1
-0
1.8
59.55
44.8

Associated Gene:

Gene:
FAM171A1
Ensembl Gene ID:
ENSAPLG00000013617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045104
21767382 - 21840845
73464
ENSAPLT00000026332
21768024 - 21840845
72822
ENSAPLT00000020178
21756736 - 21840845
84110
ENSAPLT00000014202
21756700 - 21840845
84146