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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21838512_21839143_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21838512 - 21839143
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
CTGGCTTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTTACT
Flanking Amino Acid:
VLLCLLLYYCRRKCLRPRQH
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
74.2
0.55
0.9
68.4
37.5
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
67.9
0.64
1.6
82.93
38.6

Associated Gene:

Gene:
FAM171A1
Ensembl Gene ID:
ENSAPLG00000013617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045104
21767382 - 21840845
73464
ENSAPLT00000026332
21768024 - 21840845
72822
ENSAPLT00000020178
21756736 - 21840845
84110
ENSAPLT00000014202
21756700 - 21840845
84146