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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21870243_21870346_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21870243 - 21870346
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CGTGTGTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
AAATCTTTGATT
Flanking Amino Acid:
DTLDLSNAEVLKELYTLLNE
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
76.8
0.6
1
72.6
42.4
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
67.6
0.64
1.1
74.57
36.1

Associated Gene:

Gene:
NMT2
Ensembl Gene ID:
ENSAPLG00000013818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019680
21853318 - 21881381
28064
ENSAPLT00000014452
21853353 - 21885237
31885