Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21870439_21870544_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21870439 - 21870544

Intron Length:

106

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TCATCAATTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TAATTTGTAATT

Flanking Amino Acid:

RFDYSPEFLLWALRPPGWLP

Intron Amino Acid Position:

201

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

75.8

35.2

Major BPS

84.4

0.85

1.1

34.5

Major PPT

68.9

0.42

0.9

59.9

40.4

Minor 5ss

29.8

-2.3

2.6

30.5

37.5

Minor BPS

54.2

0.21

73.01

38.5

Associated Gene:

Gene:

NMT2

Ensembl Gene ID:

ENSAPLG00000013818

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019680

21853318 - 21881381

28064

ENSAPLT00000014452

21853353 - 21885237

31885