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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21870662_21871363_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21870662 - 21871363
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTTTTTCACT
Flanking Amino Acid:
AIPANIRIYDSVKKMVEINF
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.5
0.73
0.7
81.2
30.1
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
65.3
0.56
1.7
82.67
39.4

Associated Gene:

Gene:
NMT2
Ensembl Gene ID:
ENSAPLG00000013818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014452
21853353 - 21885237
31885
ENSAPLT00000019680
21853318 - 21881381
28064