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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21871535_21873448_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21871535 - 21873448
Intron Length:
1914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTAG
5'SS Class:
major
3'SS Sequence:
ATTTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATCTCATGAATT
Flanking Amino Acid:
VVLPKPVATCRYWHRSLNPR
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.2
65.8
42.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.3
0.84
0.8
82
34
Minor 5ss
48.7
-0.1
2.6
64.1
47.4
Minor BPS
59.5
0.38
1.7
76.66
39.8

Associated Gene:

Gene:
NMT2
Ensembl Gene ID:
ENSAPLG00000013818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019680
21853318 - 21881381
28064
ENSAPLT00000014452
21853353 - 21885237
31885