About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21878435_21880766_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21878435 - 21880766
Intron Length:
2332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTATTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAAATTTTAAAA
Flanking Amino Acid:
MNDALIIAKLKGFDVFNALD
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.2
0.5
1.1
66
44.4
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
52.8
0.09
1.4
57.75
34.7

Associated Gene:

Gene:
NMT2
Ensembl Gene ID:
ENSAPLG00000013818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019680
21853318 - 21881381
28064
ENSAPLT00000014452
21853353 - 21885237
31885