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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21880905_21881117_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21880905 - 21881117
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTGAACTAAAAA
Flanking Amino Acid:
WRCPGMESEKVGLVLQ*
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
82.9
0.74
0.6
81.6
23.5
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
48
-0.1
2
62.53
43.1

Associated Gene:

Gene:
NMT2
Ensembl Gene ID:
ENSAPLG00000013818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019680
21853318 - 21881381
28064