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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21880905_21885028_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21880905 - 21885028
Intron Length:
4124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TATGTATGAAAA
Flanking Amino Acid:
WRCPGMESEKHIDHQVELEP
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
61.3
0.28
1
62
30.6
Major PPT
90.6
0.91
0.6
89
20.1
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
46.5
-0.2
1.8
59.86
39.3

Associated Gene:

Gene:
NMT2
Ensembl Gene ID:
ENSAPLG00000013818
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014452
21853353 - 21885237
31885