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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21898350_21898459_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
21898350 - 21898459
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATTCCTG
5'SS Class:
weak_major
3'SS Sequence:
TTTATTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TATGCATTTATT
Flanking Amino Acid:
KQATVGDINIECPGMLDLKG
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.1
50.8
45.4
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
82.7
0.74
1
80.7
36.7
Minor 5ss
47.8
-0.2
2.8
61.7
45
Minor BPS
51.4
0.12
2
74.1
42.9

Associated Gene:

Gene:
ACBD7
Ensembl Gene ID:
ENSAPLG00000014167
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014749
21893615 - 21898683
5069