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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21900810_21901754_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21900810 - 21901754
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATATTTTATAT
Flanking Amino Acid:
MFFSGSYGPHSEYFHLMYKL
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.1
24.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80
0.68
1
76.5
37.7
Minor 5ss
44.3
-0.6
2.9
62.8
42
Minor BPS
51.4
0.12
1.7
70.7
40.1

Associated Gene:

Gene:
OLAH
Ensembl Gene ID:
ENSAPLG00000014174
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014787
21899254 - 21904055
4802