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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21917216_21919743_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21917216 - 21919743
Intron Length:
2528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATCTAG
5'SS Class:
major
3'SS Sequence:
TCCTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTGTCTTTAAAA
Flanking Amino Acid:
FMRCFLPTDRVKPFLNEEEY
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
63.8
38.8
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
90.9
0.92
0.6
86.5
24.5
Minor 5ss
37.8
-1.4
3
46.5
48.8
Minor BPS
75.9
0.81
1.3
80.44
35.4

Associated Gene:

Gene:
CROT
Ensembl Gene ID:
ENSAPLG00000014281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041263
21917093 - 21933528
16436