About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21919869_21920756_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21919869 - 21920756
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGATGCTGAACA
Flanking Amino Acid:
VERAKTRRNWLEDWWLNVAY
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
91.2
0.93
0.7
89.3
26.1
Minor 5ss
47.3
-0.3
2.5
60.3
44.3
Minor BPS
58
0.25
1.9
70.36
41.3

Associated Gene:

Gene:
CROT
Ensembl Gene ID:
ENSAPLG00000014281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029761
21914936 - 21922678
7743
ENSAPLT00000027414
21914936 - 21967393
52458
ENSAPLT00000014940
21914936 - 21934085
19150
ENSAPLT00000041263
21917093 - 21933528
16436