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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21920939_21921119_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21920939 - 21921119
Intron Length:
181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGACAA
5'SS Class:
major
3'SS Sequence:
TTGTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TCATGCTTAATT
Flanking Amino Acid:
HTLKFWELLREEKVPIERSR
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
61.6
39.1
Major BPS
78.3
0.7
1
80
32.1
Major PPT
86.3
0.82
0.8
81.8
34.6
Minor 5ss
32.5
-2
3.1
35.9
41.6
Minor BPS
68
0.64
1.8
80.42
41.9

Associated Gene:

Gene:
CROT
Ensembl Gene ID:
ENSAPLG00000014281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041263
21917093 - 21933528
16436
ENSAPLT00000029761
21914936 - 21922678
7743
ENSAPLT00000027414
21914936 - 21967393
52458
ENSAPLT00000014940
21914936 - 21934085
19150