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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21921245_21923873_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21921245 - 21923873
Intron Length:
2629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAACAAA
5'SS Class:
major
3'SS Sequence:
TGCTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTCACATTT
Flanking Amino Acid:
RDSVCNYFKTAAEGECPSHV
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
69.2
36.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.5
0.73
0.9
80.2
37.3
Minor 5ss
38.2
-1.3
3
44.9
45.1
Minor BPS
47.1
-0.1
2
71.25
40

Associated Gene:

Gene:
CROT
Ensembl Gene ID:
ENSAPLG00000014281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041263
21917093 - 21933528
16436
ENSAPLT00000027414
21914936 - 21967393
52458
ENSAPLT00000014940
21914936 - 21934085
19150