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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21926055_21926439_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21926055 - 21926439
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCTAAA
5'SS Class:
major
3'SS Sequence:
ATTTTTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TATTTCTGAAAA
Flanking Amino Acid:
PHATPENYTEVTRLGIVGDP
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.2
74.1
38.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
79.9
0.67
0.8
78.4
35.5
Minor 5ss
39.2
-1.2
3
50.4
46.1
Minor BPS
65.4
0.48
1.5
74.86
35.7

Associated Gene:

Gene:
CROT
Ensembl Gene ID:
ENSAPLG00000014281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041263
21917093 - 21933528
16436
ENSAPLT00000027414
21914936 - 21967393
52458
ENSAPLT00000014940
21914936 - 21934085
19150