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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21927942_21929333_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21927942 - 21929333
Intron Length:
1392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
TTAAGCTGATGA
Flanking Amino Acid:
LQLAYYKCHGRPGCCYETAM
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
89.1
0.88
0.6
88.3
21.3
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
40.7
-0.7
2.2
53.84
44.2

Associated Gene:

Gene:
CROT
Ensembl Gene ID:
ENSAPLG00000014281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014940
21914936 - 21934085
19150
ENSAPLT00000041263
21917093 - 21933528
16436
ENSAPLT00000027414
21914936 - 21967393
52458