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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21929458_21931287_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21929458 - 21931287
Intron Length:
1830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAATACA
5'SS Class:
major
3'SS Sequence:
TTACTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTTTTTTTAACC
Flanking Amino Acid:
CKSMLDPSASSYERLQLMHA
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.1
66.9
38.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73.1
0.52
1
70.2
39.1
Minor 5ss
37.4
-1.4
2.8
44.1
43.3
Minor BPS
79.9
0.92
1
82.49
30.8

Associated Gene:

Gene:
CROT
Ensembl Gene ID:
ENSAPLG00000014281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041263
21917093 - 21933528
16436
ENSAPLT00000027414
21914936 - 21967393
52458
ENSAPLT00000014940
21914936 - 21934085
19150