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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21931367_21931942_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21931367 - 21931942
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTCTTG
5'SS Class:
major
3'SS Sequence:
ATTTCTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATTTCTTTGACA
Flanking Amino Acid:
KLRKECENGRGFDRHLLGLL
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.7
44.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
79.8
0.67
1
76.5
37
Minor 5ss
46.5
-0.4
3.1
64.7
46.6
Minor BPS
81
0.97
1
84.56
27.9

Associated Gene:

Gene:
CROT
Ensembl Gene ID:
ENSAPLG00000014281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041263
21917093 - 21933528
16436
ENSAPLT00000027414
21914936 - 21967393
52458
ENSAPLT00000014940
21914936 - 21934085
19150