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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21932037_21932223_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21932037 - 21932223
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCAGG
5'SS Class:
major
3'SS Sequence:
TGGTGTTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TGGTGTTTTACA
Flanking Amino Acid:
ELYVDPAFKASGGGGNFILS
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
63.6
48.1
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
78.9
0.65
1
72.2
42.7
Minor 5ss
44.3
-0.6
2.7
57.9
46.4
Minor BPS
49.3
-0
2.1
63.45
43

Associated Gene:

Gene:
CROT
Ensembl Gene ID:
ENSAPLG00000014281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041263
21917093 - 21933528
16436
ENSAPLT00000027414
21914936 - 21967393
52458
ENSAPLT00000014940
21914936 - 21934085
19150