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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21932344_21967334_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21932344 - 21967334
Intron Length:
34991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGATG
5'SS Class:
major
3'SS Sequence:
TTGTTTGTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TATTCCTTTATT
Flanking Amino Acid:
YGFFYSIRDDRSH*
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
69.9
42.1
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
81.9
0.72
0.9
81.2
36.5
Minor 5ss
30.9
-2.2
3.2
40.5
45.5
Minor BPS
76.3
0.91
1.5
89.12
35.3

Associated Gene:

Gene:
CROT
Ensembl Gene ID:
ENSAPLG00000014281
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027414
21914936 - 21967393
52458