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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21936306_21936992_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21936306 - 21936992
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTTGG
5'SS Class:
major
3'SS Sequence:
GTTCATTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTGTCTTGCATT
Flanking Amino Acid:
TSALDTESEKIVQEALDKAR
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
60.8
46.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
74.7
0.56
1
69.1
41.5
Minor 5ss
44.1
-0.6
2.9
58.8
45.7
Minor BPS
48.8
-0
1.9
67.85
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019548
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040041
21936099 - 21937204
1106