Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21987153_21987959_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21987153 - 21987959

Intron Length:

807

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

GTATTGTTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTCAT

U12 Branch Point Sequence:

ATATACTGAACT

Flanking Amino Acid:

IHSFIDSLPDKYNTRVGDKG

Intron Amino Acid Position:

1082

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

86.1

24.7

Major BPS

79.8

0.74

0.9

81.3

29.9

Major PPT

74.4

0.55

45.1

Minor 5ss

44.3

-0.6

2.9

62.8

Minor BPS

0.58

1.6

82.02

38.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002991

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015752

21985992 - 22027915

41924

ENSAPLT00000003127

21985992 - 22027915

41924