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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21989724_21990194_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21989724 - 21990194
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
GTTTCAATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTTTCTTAAAGA
Flanking Amino Acid:
DSYSEEGEKPETFGGNTTIK
Intron Amino Acid Position:
947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
73.7
0.53
0.9
67
38.3
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
56.5
0.2
2
70.26
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002991
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015752
21985992 - 22027915
41924
ENSAPLT00000003127
21985992 - 22027915
41924