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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21999851_22000191_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21999851 - 22000191
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TATTATTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AGTTGTTTAAAA
Flanking Amino Acid:
FSVIFSEIIGIFSQTEETYL
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.7
33.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
82.2
0.72
0.8
77
36.6
Minor 5ss
40
-1.1
2.7
42.4
44.3
Minor BPS
56.5
0.2
1.8
67.73
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002991
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015752
21985992 - 22027915
41924
ENSAPLT00000003127
21985992 - 22027915
41924