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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22001313_22002922_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22001313 - 22002922
Intron Length:
1610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTCT
5'SS Class:
major
3'SS Sequence:
TTCCCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CCATAATTAATC
Flanking Amino Acid:
GIYYKLVNMQTIEAEDTSLE
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.5
36.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.3
0.73
0.8
80
32
Minor 5ss
41.8
-0.9
3
60.1
44.2
Minor BPS
49.4
-0
1.8
57.2
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002991
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003127
21985992 - 22027915
41924
ENSAPLT00000015752
21985992 - 22027915
41924