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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22015030_22015089_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
22015030 - 22015089
Intron Length:
60

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGT|GCAACTAAA
5'SS Class:
weak_major
3'SS Sequence:
CTGCTTTTGAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTAAAT
U12 Branch Point Sequence:
GACTAAATGACT
Flanking Amino Acid:
PNNNEDVYVQVGLIEPFQIQ
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.8
0.09
1.5
59.8
44.7
Major BPS
61
0.27
1.1
67.3
35.2
Major PPT
52.6
0.06
1.8
63.8
41.7
Minor 5ss
32.3
-2
3.8
42.5
44.5
Minor BPS
43.8
-0.4
2
60.52
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002991
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015752
21985992 - 22027915
41924