About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22015030_22019177_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
22015030 - 22019177
Intron Length:
4148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTTTGAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTAAAT
U12 Branch Point Sequence:
GACTAAATGACT
Flanking Amino Acid:
AFGGQEKEIKSGLIEPFQIQ
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
61
0.27
1.1
67.3
35.2
Major PPT
52.6
0.06
1.8
63.8
41.7
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
43.8
-0.4
2
60.52
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002991
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003127
21985992 - 22027915
41924