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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22015168_22019177_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
22015168 - 22019177
Intron Length:
4010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGGAAGACAAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTATGATAAAAT
Flanking Amino Acid:
AFGGQEKEIKRNARCCCVSW
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
84.6
0.86
1
74
41.2
Major PPT
41.2
-0.5
1.7
33.1
40.1
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
46
-0.2
2.3
71.4
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002991
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015752
21985992 - 22027915
41924