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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22020459_22021158_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22020459 - 22021158
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
ATTTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CTACATTTACCT
Flanking Amino Acid:
DVGELNTRLTDDVSKINEGI
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
68.8
36.4
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
34.2
-1.8
3.1
38.1
40.6
Minor BPS
49
0.01
1.8
67
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002991
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015752
21985992 - 22027915
41924
ENSAPLT00000003127
21985992 - 22027915
41924