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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22024272_22025563_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22024272 - 22025563
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TACTCTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GCTCTATTAAAA
Flanking Amino Acid:
FVNFGNTSSIGNSSDVTPPP
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
74.8
0.56
1
79
32.9
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
49.7
-0
1.7
59.98
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002991
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003127
21985992 - 22027915
41924