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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22025749_22027817_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22025749 - 22027817
Intron Length:
2069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAATATT
5'SS Class:
major
3'SS Sequence:
CATAACATTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GTAAACATAACA
Flanking Amino Acid:
SSQGQEQEGKHTTMNLNFSS
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
78.3
35.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
62.9
0.29
1
52.1
41.9
Minor 5ss
43.2
-0.7
3
65.5
39.6
Minor BPS
50.3
0
1.8
64.7
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002991
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003127
21985992 - 22027915
41924
ENSAPLT00000015752
21985992 - 22027915
41924