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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2203846_2205353_R

Intron Information:

Intron Rank:
151141
Intron Class:
major
Intron Phase:
Intron Coordinates:
2203846 - 2205353
Intron Length:
1508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
TACTACATACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
66.4
0.41
1
61.3
37
Major PPT
81
0.7
0.9
87.2
23.8
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
44.7
-0.3
2.1
64.62
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028826
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029085
2202757 - 2210810
8054
ENSAPLT00000039766
2202757 - 2206315
3559