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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2205254_2205353_R

Intron Information:

Intron Rank:
151144
Intron Class:
major
Intron Phase:
Intron Coordinates:
2205254 - 2205353
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TCACCCCTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCCCCCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
67.2
0.39
0.9
59.1
36.7
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
75.2
0.87
1.2
81.08
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028826
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032691
2204858 - 2210810
5953