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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22052815_22068590_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22052815 - 22068590
Intron Length:
15776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTAGGATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
AACACTTGAATT
Flanking Amino Acid:
VERRNLITVCRRQIFDTTPA
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.6
28.6
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
65.8
0.36
1
57.4
42
Minor 5ss
25.3
-2.8
3.2
31.7
42.9
Minor BPS
53.7
0.2
1.4
65.16
39.5

Associated Gene:

Gene:
RUNDC3B
Ensembl Gene ID:
ENSAPLG00000004198
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004341
22052711 - 22086527
33817