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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2205475_2206245_R

Intron Information:

Intron Rank:
151142
Intron Class:
major
Intron Phase:
Intron Coordinates:
2205475 - 2206245
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTCAT
5'SS Class:
major
3'SS Sequence:
GTGCTCATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CTGTGCTCATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
67
40
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
72.7
0.51
1
62.8
43
Minor 5ss
32.4
-2
3.1
42
44.5
Minor BPS
43.9
-0.4
2.1
53.79
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028826
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032691
2204858 - 2210810
5953
ENSAPLT00000029085
2202757 - 2210810
8054