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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22076783_22079968_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22076783 - 22079968
Intron Length:
3186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTAT
5'SS Class:
major
3'SS Sequence:
TCTGTTTTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATAATCTTACCA
Flanking Amino Acid:
MLLGLNAIDFSFCLKGEGLD
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
70.2
36.1
Major BPS
80
0.75
1
78.6
31
Major PPT
77.3
0.61
0.9
78
35.1
Minor 5ss
44.6
-0.6
3.2
64.1
47.4
Minor BPS
57.8
0.24
1.6
67.09
39

Associated Gene:

Gene:
RUNDC3B
Ensembl Gene ID:
ENSAPLG00000004198
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004341
22052711 - 22086527
33817