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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22080050_22081296_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22080050 - 22081296
Intron Length:
1247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTT
5'SS Class:
major
3'SS Sequence:
TATGATCCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGGCTAATAAAT
Flanking Amino Acid:
DYTPYLKFTQSSDSISSDEE
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.9
34.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.5
0.53
1
63.1
43.5
Minor 5ss
45.1
-0.5
3.1
67.5
43.4
Minor BPS
44.4
-0.3
1.9
61.83
41.1

Associated Gene:

Gene:
RUNDC3B
Ensembl Gene ID:
ENSAPLG00000004198
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004341
22052711 - 22086527
33817