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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22108773_22110978_R

Intron Information:

Intron Rank:
8
Intron Class:
major_hybrid
Intron Phase:
1
Intron Coordinates:
22108773 - 22110978
Intron Length:
2206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGTGC
5'SS Class:
major
3'SS Sequence:
GTACTATGTTGAG|T
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTTATTTAATT
Flanking Amino Acid:
TELWESETLKIPQSASTWAV
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.6
38.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
48.9
-0
1.8
58.5
46.2
Minor 5ss
38.8
-1.3
3.3
50.1
40.9
Minor BPS
72.9
0.8
1.4
85.65
34.4

Associated Gene:

Gene:
SLC25A40
Ensembl Gene ID:
ENSAPLG00000029327
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026775
22107474 - 22126059
18586