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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22111061_22111370_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22111061 - 22111370
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTTCTTAATA
Flanking Amino Acid:
AFTSGAASGSIAAVITLPFD
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
75.1
40.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
83.8
0.76
0.8
81.8
28.7
Minor 5ss
42.3
-0.9
2.9
61.4
42.8
Minor BPS
87.5
1.17
0.8
90.77
23.3

Associated Gene:

Gene:
SLC25A40
Ensembl Gene ID:
ENSAPLG00000029327
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026775
22107474 - 22126059
18586