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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22115019_22115950_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22115019 - 22115950
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGTTTTTAAACA
Flanking Amino Acid:
IPIVAGSLSRFGSVTVMSPL
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.4
0.75
0.8
80.6
30.1
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
60.6
0.33
1.6
69.66
36.8

Associated Gene:

Gene:
SLC25A40
Ensembl Gene ID:
ENSAPLG00000029327
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026775
22107474 - 22126059
18586